Function reference • CytoRSuite

Compensation Functions to compute, edit and visualise compensation
`spillover_compute()`	Compute Spillover Matrix
`spillover_edit()`	Edit Spillover Matrix
`cyto_plot_compensation()`	Plot Compensation in All Fluorescent Channels
Annotation Functions to annotate flow cytometry data
`cyto_markers()`	Assign marker names to flowFrame or flowSet
`cyto_annotate()`	Interactively edit pData Information for a flowSet or GatingSet
Helpers Functions to simplify regular operations
`cyto_fluor_channels()`	Extract Fluorescent Channels
`cyto_channel_check()`	Check Supplied Channels
`cyto_channel_select()`	Select Fluorescent Channel for Compensation Controls
`cyto_trans_check()`	Check Transformation List Object
`cyto_sample()`	Sample a flowFrame
`gate_type()`	Get Gate Type from Saved Gate.
Gating Functions to draw, construct, edit or remove gates
`gate_rectangle_draw()`	Draw Rectangle Gate(s) Around Populations.
`gate_polygon_draw()`	Draw Polygon Gate(s) Around Populations.
`gate_ellipse_draw()`	Draw Ellipsoid Gate(s) Around Populations.
`gate_interval_draw()`	Draw Interval Gate(s) Around Populations.
`gate_threshold_draw()`	Draw Threshold Gate(s) Around Populations.
`gate_boundary_draw()`	Draw Boundary Gate(s) Around Populations.
`gate_quadrant_draw()`	Draw Quadrant Gates Around Populations.
`gate_web_draw()`	Draw Web Gates Around Populations.
`gate_draw()`	gate_draw
`gate_edit()`	Edit Existing Gate(s).
`gate_remove()`	Remove Gate(s) and Edit gatingTemplate csv File
Modification of gatingTemplate Functions to modify the gatingTemplate
`gatingTemplate_edit()`	Interactively Edit a gatingTemplate
Visualisation Functions to visualise flow cytometry data
`cyto_plot()`	cyto_plot
`cyto_plot_profile()`	Plot Expression Profile in All Fluorescent Channels
`cyto_plot_gating_scheme()`	Plot Flow Cytometry Gating Strategies
`cyto_plot_gate()`	Plot Gate Objects onto an Existing Plot
`cyto_plot_label()`	Add boxed text labels to cyto_plot
`cyto_plot_contour()`	Contour Lines for cyto_plot
`cyto_plot_overlay()`	Overlay Points on cyto_plot
Statistics Functions to compute and export statistics
`cyto_stats_compute()`	Compute Statistics
Conversion of gatingTemplate Function to convert old gatingTemplates to new format
`gatingTemplate_convert()`	Convert Old gatingTemplates to New Format

Reference

Compensation

Annotation

Helpers

Gating

Modification of gatingTemplate

Visualisation

Statistics

Conversion of gatingTemplate

Contents