Explore & visualise flow cytometry data.
cyto_plot(x, ...)
| x | object of class |
|---|---|
| ... | additional method-specific arguments for cyto_plot. |
cyto_plot is flow cytometry visualisation tool built on base graphics
which supports all existing flow cytometry objects including
flowFrame,
flowSet,
GatingHierarchy and
GatingSet objects. The type of
plot constructed by cyto_plot is determined by the number of channels
supplied to the channels argument. If a single channel is supplied, a
1-D density distribution will be plotted. Supplying two channels to this
argument will result in construction of a 2-D scatterplot with a blue-red
density colour scale for points.
Some key features of cyto_plot include:
autocomplete friendly arguments
minimal coding
1-D density distributions
2-D scatterplots
stacked density distributions
2-D contour lines
back-gating
overlays
population labelling
grid to visualise multiple samples
plot gate objects
plot in pop-up windows
sampling
fully customisable
copy and paste arguments from gate_draw