NEWS.md
cyto_plot_label now accepts stat freq instead of percent for consistency with cyto_stats_compute.density_layers argument for cyto_plot is now operational. This argument designates the number of layers to include per plot for stacked density distributions.cyto_markers has been updated to allow editing of channel names as well.cyto_stats_compute now calculates the robust CV for stat = “CV”.gatingTemplate_edit to facilitate interactive editing of the gatingTemplate. The feature is designed for adding boolean, reference or automated gates to existing gatingTemplates.gate_edit.cyto_annotate to save pData information to a csv file (“Experiment-Details.csv”) for future use.cyto_annotate can now accept a csv file containing experiment details instead of manually re-entering this information.cyto_markers updated to save markers to csv file (“Experiment-Markers.csv”) for future use.group_by in gate_draw. To facilitate this change major changes were made to the way the gatingTemplate is handled and manipulated in the package. Users of 0.9.5 should use gatingTemplate_convert to convert their old gatingTemplates to this new format.cyto_plot and cyto_plot_gating_scheme through overlay and back_gate arguments.cyto_plot_gating_scheme to colour gates and plot borders based on population.spillover_edit has been updated to include density histograms with statistics for unstained and stained controls. Statistics automatically update as spillover matrix is edited.cyto_plot_compensation is now incorporated directly into spillover_edit in the plots tab.cyto_markers provides an interactive editable table to assign marker names to channels.cyto_annotate provides an interactive editable table to annotate samples with experimental details.cyto_plot functions have been added to layer overlays (cyto_plot_overlay), gates (cyto_plot_gate), labels (cyto_plot_label) or contour lines (cyto_plot_contour) onto existing plots.