Save High Resolution cyto_plot Images
cyto_plot_save( save_as, width = 7, height = 7, units = "in", res = 300, multiple = FALSE, layout = NULL, ... )
save_as | name of the file to which the plot should be saved (including the file extension). Supported file formats include png, tiff, jpeg, svg and pdf. |
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width | numeric indicating the width of exported plot in |
height | numeric indicating the height of the exported plot in
|
units | units to be used to set plot size, can be either pixels
( |
res | resolution in ppi, set to 300 by default. |
multiple | logical indicating whether multiple pages should be saved to
separate numbered files, set to |
layout | a vector or matrix defining the custom layout of the plot to be created using `cyto_plot_layout`, set to NULL by default to use standard `cyto_plot` layout. Custom layouts are required when making multiple `cyto_plot` calls in the same image. |
... | additional arguments for the appropriate |
cairo
Dillon Hammill (Dillon.Hammill@anu.edu.au)
if (FALSE) { library(CytoExploreRData) # Load samples into GatingSet fs <- Activation gs <- GatingSet(fs) # Apply compensation gs <- cyto_compensate(gs) # Transform fluorescent channels gs <- cyto_transform(gs) # Apply gatingTemplate cyto_gatingTemplate_apply(gs, Activation_gatingTemplate) # Save png image of gating scheme after plotting cyto_plot_save("Gating-Scheme.png", width = 20, height = 16 ) cyto_plot_gating_scheme(gs[[1]]) # Save multiple pages to the same pdf file cyto_plot_save("CD4-T-Cells.pdf", height = 8, width = 16, multiple = TRUE ) cyto_plot(gs, parent = "CD4 T Cells", alias = "", channels = c("Alexa Fluor 647-A", "7-AAD-A"), layout = c(1, 2) ) }