Add boolean gate to GatingSet and gatingTemplate
cyto_gate_bool( x, parent = NULL, alias = NULL, logic = NULL, gatingTemplate = NULL )
x | object of class |
---|---|
parent | name of the parent population to which the boolean gates should be added, set to the most recent common ancestor by default. |
alias | vector of names for the boolean populations. |
logic | vector of logic to define each of the boolean populations. |
gatingTemplate | name of the |
object of class GatingSet
with new boolean gates and updated
gatingTemplate csv file with appropriate entries.
Dillon Hammill, Dillon.Hammill@anu.edu.au
if (FALSE) { library(CytoExploreRData) # Activation GatingSet gs <- GatingSet(Activation) # Compensation gs <- cyto_compensate(gs) # Transformations gs <- cyto_transform(gs) # Gating gs <- cyto_gatingTemplate_apply(gs, Activation_gatingTemplate) # Add boolean gate gs <- cyto_gate_bool(gs, alias = "CD4+CD8", logic = "CD4 T Cells|CD8 T Cells") }