CytoExploreR implementation of flowWorkspace
flowjo_log_trans
transformation
which always returns a
transformerList
object and
displays the result of the transformation(s) using cyto_plot
.
To combine different types of transformations have a look at
cyto_transformer_combine
. cyto_transform
should
be used to apply the transformations to the data.
# S3 method for GatingSet cyto_transformer_log( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... ) # S3 method for GatingHierarchy cyto_transformer_log( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... ) # S3 method for flowSet cyto_transformer_log( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... ) # S3 method for flowFrame cyto_transformer_log( x, channels = NULL, parent = "root", select = NULL, plot = TRUE, popup = FALSE, display = 25000, axes_limits = "machine", ... )
x | an object of class |
---|---|
channels | name(s) of channel(s)/marker(s) for which transformation functions must be generated. Set to all the fluorescent channels by default if no channels/markers are supplied. |
parent | name of the parent population to use for generating the transformation(s). |
select | list of selection criteria passed to |
plot | logical indicating whether the results of transformations should
be plotted using |
popup | logical indicating whether the plots should be constructed in a pop-up window. |
display | number or frequency of events to display in plots, set to
25000 events by default. See |
axes_limits | options include |
... | additional arguments passed to
|
a transformerList
object.
Dillon Hammill, Dillon.Hammill@anu.edu.au