Remove Gate(s) and Edit gatingTemplate csv File
cyto_gate_remove( gs, parent = NULL, alias = NULL, channels = NULL, type = NULL, gatingTemplate = NULL, ... )
gs | an object of class |
---|---|
parent | name of the parent population from which to remove the gate.
This argument is not necessary but is included to allow conversion of
|
alias | name(s) of the population(s) to remove (e.g. "Single Cells"). By default all descendant populations will be removed as well. |
channels | names of the channel(s) used to gate the population. This
argument is not necessary but is included to allow conversion of
|
type | gate type(s) used to for the gates to be removed. This argument
is not necessary but is included to allow conversion of
|
gatingTemplate | name of the |
... | additional |
an object of class GatingSet
with gate and children removed
and updated gatingTemplate to reflect these changes.
Dillon Hammill, Dillon.Hammill@anu.edu.au
if (FALSE) { library(CytoExploreRData) # Load in samples fs <- Activation gs <- GatingSet(fs) # Apply compensation gs <- cyto_compensate(gs) # Transform fluorescent channels gs <- cyto_transform(gs) # Gate using cyto_gate_draw gt <- Activation_gatingTemplate gt_gating(gt, gs) # Remove T Cells population - replace gatingTemplate name cyto_gate_remove(gs, "T Cells", gatingTemplate = "gatingTemplate.csv") }