Plot Gate Objects onto an Existing cyto_plot
# S3 method for default cyto_plot_gate(gate, ...) # S3 method for rectangleGate cyto_plot_gate( gate, channels = NULL, gate_line_type = 1, gate_line_width = 2.5, gate_line_col = "red", gate_fill = "white", gate_fill_alpha = 0, ... ) # S3 method for polygonGate cyto_plot_gate( gate, channels = NULL, gate_line_type = 1, gate_line_width = 2.5, gate_line_col = "red", gate_fill = "white", gate_fill_alpha = 0, ... ) # S3 method for ellipsoidGate cyto_plot_gate( gate, channels = NULL, gate_line_type = 1, gate_line_width = 2.5, gate_line_col = "red", gate_fill = "white", gate_fill_alpha = 0, ... ) # S3 method for quadGate cyto_plot_gate( gate, channels = NULL, gate_line_type = 1, gate_line_width = 2.5, gate_line_col = "red", gate_fill = "white", gate_fill_alpha = 0, ... ) # S3 method for filters cyto_plot_gate( gate, channels = NULL, gate_line_type = 1, gate_line_width = 2.5, gate_line_col = "red", gate_fill = "white", gate_fill_alpha = 0, ... ) # S3 method for list cyto_plot_gate( gate, channels = NULL, gate_line_type = 1, gate_line_width = 2.5, gate_line_col = "red", gate_fill = "white", gate_fill_alpha = 0, ... )
| gate | gate object of class
|
|---|---|
| ... | not in use. |
| channels | fluorescent channels to used to construct the plot. |
| gate_line_type | integer [0,6] which controls the line type, set to
|
| gate_line_width | numeric to adjust line thickness of gates, set to
|
| gate_line_col | indicates the colour of the gate to be constructed, set
to |
| gate_fill | fill colour(s) to use for gates, set to "white" by default. |
| gate_fill_alpha | numeric [0,1] to control gate fill colour transparency, set to 0 by default to make gate fill colour completely transparent. |
invisibly return modified gate objects with dimensions appropriate for the constructed plot.
Dillon Hammill, Dillon.Hammill@anu.edu.au