Add density distributions to empty plots
cyto_plot_density(x, ...) # S3 method for flowFrame cyto_plot_density( x, channel, overlay = NA, display = 1, density_modal = TRUE, density_smooth = 1.5, density_stack = 0.5, density_cols = NA, density_fill = NA, density_fill_alpha = 1, density_line_type = 1, density_line_width = 1, density_line_col = "black", ... ) # S3 method for list cyto_plot_density( x, density_cols = NA, density_fill = NA, density_fill_alpha = 1, density_line_type = 1, density_line_width = 1, density_line_col = "black", ... )
x | list of density objects for plotting |
---|---|
... | not in use. |
channel | name of the channels to be used to construct the plot. |
overlay | list of flowFRame objects to overlay. |
display | controls the number or percentage of events to display, set to 1 by default to display all events. |
density_modal | logical indicating whether density should be normalised
to mode and presented as a percentage. Set to |
density_smooth | smoothing parameter passed to
|
density_stack | numeric [0,1] indicating the degree of offset for overlaid populations, set to 0.5 by default. |
density_cols | vector of colls to use to select density_fill colours |
density_fill | colour(s) used to fill polygons. |
density_fill_alpha | numeric [0,1] used to control fill transparency, set to 1 by default to remove transparency. |
density_line_type | line type(s) to use for border(s), set to solid lines by default. |
density_line_width | line width for border. |
density_line_col | colour(s) for border line, set to "black" by default. |
Dillon Hammill, Dillon.Hammill@anu.edu.au