cyto_markers_extract
will check whether the supplied channels or
marker names are valid for the
flowFrame
,
flowSet
,
GatingHierarchy
or
GatingSet
and return a vector of
marker names. The name of the channel will be returned if there is no
associated marker found.
cyto_markers_extract(x, channels, plot = FALSE)
x | an object of class
|
---|---|
channels | vector of channel and/or marker names (e.g. c("Alexa Fluor 700-A","CD8")). |
plot | logical indicating whether the channels will be used to construct
a plot, set to FALSE by default. If set to TRUE an additional check will be
performed to ensure that only 1 or 2 |
A vector of marker names.
Dillon Hammill, Dillon.Hammill@anu.edu.au
library(CytoExploreRData) # Load in samples fs <- Activation # Add samples to GatingSet gs <- GatingSet(fs) # Extract markers used for PE-A and Alexa Fluor 488-A cyto_markers_extract(gs, c("Alexa Fluor 488-A","PE-A"))#> [1] "CD8" "Va2"