Group a flowSet or GatingSet by experiment variables

cyto_group_by(x, group_by = "all")

Arguments

x	an object of class `flowSet` or `GatingSet`.
group_by	names of cyto_details variables to use for merging, set to "all" to group all samples in `x`. The order of the grouping can be controlled by specifying the factor levels in a list (e.g. list(Treatment = c("Stim-A","Stim-C","Stim-B", "Stim-D"))).

Value

a named list of flowSet or GatingSet objects respectively.

Author

Dillon Hammill, Dillon.Hammill@anu.edu.au

Examples


# Load in CytoExploreRData to access data
library(CytoExploreRData)

# Group flowSet by Treatment
cyto_group_by(Activation, "Treatment")
#> $`Stim-A`
#> A flowSet with 8 experiments.
#> 
#> column names(18): FSC-A FSC-H ... APC-Cy7-A Time
#> 
#> 
#> $`Stim-B`
#> A flowSet with 8 experiments.
#> 
#> column names(18): FSC-A FSC-H ... APC-Cy7-A Time
#> 
#> 
#> $`Stim-C`
#> A flowSet with 8 experiments.
#> 
#> column names(18): FSC-A FSC-H ... APC-Cy7-A Time
#> 
#> 
#> $`Stim-D`
#> A flowSet with 8 experiments.
#> 
#> column names(18): FSC-A FSC-H ... APC-Cy7-A Time
#> 
#> 
#> $`NA`
#> A flowSet with 1 experiments.
#> 
#> column names(18): FSC-A FSC-H ... APC-Cy7-A Time
#> 
#> 

# Group GatingSet by Treatment and OVAConc
gs <- GatingSet(Activation)
cyto_group_by(gs, c("Treatment", "OVAConc"))
#> $`NA 0`
#> A GatingSet with 1 samples
#> 
#> $`Stim-A 0`
#> A GatingSet with 2 samples
#> 
#> $`Stim-A 5`
#> A GatingSet with 2 samples
#> 
#> $`Stim-A 50`
#> A GatingSet with 2 samples
#> 
#> $`Stim-A 500`
#> A GatingSet with 2 samples
#> 
#> $`Stim-B 0`
#> A GatingSet with 2 samples
#> 
#> $`Stim-B 5`
#> A GatingSet with 2 samples
#> 
#> $`Stim-B 50`
#> A GatingSet with 2 samples
#> 
#> $`Stim-B 500`
#> A GatingSet with 2 samples
#> 
#> $`Stim-C 0`
#> A GatingSet with 2 samples
#> 
#> $`Stim-C 5`
#> A GatingSet with 2 samples
#> 
#> $`Stim-C 50`
#> A GatingSet with 2 samples
#> 
#> $`Stim-C 500`
#> A GatingSet with 2 samples
#> 
#> $`Stim-D 0`
#> A GatingSet with 2 samples
#> 
#> $`Stim-D 5`
#> A GatingSet with 2 samples
#> 
#> $`Stim-D 50`
#> A GatingSet with 2 samples
#> 
#> $`Stim-D 500`
#> A GatingSet with 2 samples
#>