Extract Fluorescent Channels

Source: R/cyto_channels-helpers.R

Extract Fluorescent Channels

cyto_fluor_channels(x, ...)

Arguments

x

object of class flowFrame, flowSet, GatingHierarchy or GatingSet.
...

additional arguments passed to cyto_channels.

Author

Dillon Hammill, Dillon.Hammill@anu.edu.au

Examples

library(CytoExploreRData)

# Load in samples
fs <- Activation

# Add samples to GatingSet
gs <- GatingSet(fs)

# Fluorescent channels of flowFrame
cyto_fluor_channels(fs[[1]])

#>  [1] "Alexa Fluor 488-A" "PE-A"              "PE-Texas Red-A"   
#>  [4] "7-AAD-A"           "PE-Cy7-A"          "Alexa Fluor 405-A"
#>  [7] "Alexa Fluor 430-A" "Qdot 605-A"        "Alexa Fluor 647-A"
#> [10] "Alexa Fluor 700-A" "APC-Cy7-A"        

# Fluorescent channels for a flowSet
cyto_fluor_channels(fs)

#>  [1] "Alexa Fluor 488-A" "PE-A"              "PE-Texas Red-A"   
#>  [4] "7-AAD-A"           "PE-Cy7-A"          "Alexa Fluor 405-A"
#>  [7] "Alexa Fluor 430-A" "Qdot 605-A"        "Alexa Fluor 647-A"
#> [10] "Alexa Fluor 700-A" "APC-Cy7-A"        

# Fluorescent channels for GatingHierarchy
cyto_fluor_channels(gs[[1]])

#>  [1] "Alexa Fluor 488-A" "PE-A"              "PE-Texas Red-A"   
#>  [4] "7-AAD-A"           "PE-Cy7-A"          "Alexa Fluor 405-A"
#>  [7] "Alexa Fluor 430-A" "Qdot 605-A"        "Alexa Fluor 647-A"
#> [10] "Alexa Fluor 700-A" "APC-Cy7-A"        

# Fluorescent channels for GatingSet
cyto_fluor_channels(gs)

#>  [1] "Alexa Fluor 488-A" "PE-A"              "PE-Texas Red-A"   
#>  [4] "7-AAD-A"           "PE-Cy7-A"          "Alexa Fluor 405-A"
#>  [7] "Alexa Fluor 430-A" "Qdot 605-A"        "Alexa Fluor 647-A"
#> [10] "Alexa Fluor 700-A" "APC-Cy7-A"