Apply flowAI anomaly detection to clean cytometry data

cyto_clean(x, ...)

Arguments

x

object of class flowFrame, flowSet, GatingHierarchy or GatingSet. The root node extracted when a GatingSet or GatingHierachy is supplied.

...

additional arguments passed to flow_auto_qc.

References

Monaco,G. et al. (2016) flowAI: automatic and interactive anomaly discerning tools for flow cytometry data. Bioinformatics. 2016 Aug 15;32(16):2473-80. https://academic.oup.com/bioinformatics/article/32/16/2473/2240408

See also

Author

Dillon Hammill, Dillon.Hammill@anu.edu.au

Examples

library(CytoExploreRData) # Activation flowSet fs <- Activation # Clean Activation flowSet fs <- cyto_clean(fs) # Activation GatingSet gs <- GatingSet(fs) # Clean Activation GatingSet gs <- cyto_clean(gs)